PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG012300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 130aa    MW: 13221.1 Da    PI: 8.7791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG012300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.2e-14451083199
                          .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++ t  l ++ g++W+v++   + +++ +l++GW eF  a+g+ +g fvv+++ g  ++ l++k+f++
  Pavir.7KG012300.1.p  45 PGP-TALLVSPFGKVWRVEV--GRDGDGAFLGRGWAEFLAAHGVGVGWFVVLRHAG--RGALTFKAFDT 108
                          444.88999***********..999999*************************876..55569999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.8E-514109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-1244110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-1146108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-1346111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.64351109IPR003340B3 DNA binding domain
CDDcd100171.14E-851107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MASSPSAAGA AAKQLKALLP PSLRKLRISD ELAGCFDAGG GGGAPGPTAL LVSPFGKVWR  60
VEVGRDGDGA FLGRGWAEFL AAHGVGVGWF VVLRHAGRGA LTFKAFDTSF CIKEFAAPAA  120
GEHAFSYES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG012300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825231.14e-65putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS758e-30Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A2T8IBP32e-71A0A2T8IBP3_9POAL; Uncharacterized protein
STRINGPavir.J00273.1.p2e-62(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187