PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG012700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 529aa    MW: 58426.7 Da    PI: 9.0242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.1e-14280360786
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          + ++++++ l l k+f++++g++ + s+ +tl++  +s +sW+v    rk   +y l +GW+ F+++n++k gD+++F++++
  Pavir.7KG012700.1.p 280 QINANTLKELALAKPFCDAIGLQGP-STIITLKTsmSSTESWKVHAVQRKDMAGYRLLQGWRLFCSDNNIKLGDICTFTVIE 360
                          4556677789**********77743.4467777633556*******88888888*************************765 PP
2B354.52.1e-17432516186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k++++s + +++ l+lp  f++++g++k++++tl+   +s r+W+ ++   ++ +++v ++GW +F+++n++k+gD++++ +++
  Pavir.7KG012700.1.p 432 WIKKEINSTTVENR-LYLPPVFCKAIGISKPCTVTLKTSMSSTRTWQARVAPYQGTSHHVSGQGWTQFCRENRIKVGDVCTINFVE 516
                          68999999999885.**************99988888888999*******65666666***********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.1816104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1124106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-1024106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.99526104IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-13272367IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.883274372IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-13274368IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.019277372IPR003340B3 DNA binding domain
PfamPF023629.0E-12279360IPR003340B3 DNA binding domain
CDDcd100177.49E-10282362No hitNo description
SuperFamilySSF1019362.35E-16428525IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.166431528IPR003340B3 DNA binding domain
CDDcd100173.41E-13433519No hitNo description
PfamPF023621.5E-14433524IPR003340B3 DNA binding domain
SMARTSM010191.2E-6433528IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-17435524IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MASSAGRDGA QIKHPRVLLP FTCDSLRIPD ELAEGIGAEE ALVVGPASGT AKHWRVEVGW  60
DGDGAFLGRG WPEFADACGV EAGWLLVLRH RGHGLLTVKA FDANCCLIRE QLRTPAPRAV  120
GATASSKGAS RKPQFIRVHS RDFMEKLLIP SEFVQQHLPN EKLNNRQAII FGPLGEVSHI  180
ELEKNSSDDV FFSVKVFDHD GYQRESNHKE TRAQLATSSD IGEQERQEAP SVSIQKHCKI  240
KVPGSDGEKK PKGIATPLNE EPSWMKPVYE IGRPSSVKKQ INANTLKELA LAKPFCDAIG  300
LQGPSTIITL KTSMSSTESW KVHAVQRKDM AGYRLLQGWR LFCSDNNIKL GDICTFTVIE  360
TTLWHVIACT RCKETINHLC NETPSASTSS RKHNTMNNES SNKGEKRPKV SMTALNKTSS  420
RGCVFGIGPP AWIKKEINST TVENRLYLPP VFCKAIGISK PCTVTLKTSM SSTRTWQARV  480
APYQGTSHHV SGQGWTQFCR ENRIKVGDVC TINFVETTMW HVIINSRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825039.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A2T8IBP90.0A0A2T8IBP9_9POAL; Uncharacterized protein
STRINGPavir.J00270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-11B3 family protein