PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG023900.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 175aa MW: 18135.6 Da PI: 9.0527

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG023900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.5	3.1e-31	62	126	8	72
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 + ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Pavir.7KG023900.2.p 62 SADRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEA 126 689*******************************************************6666633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-26	62	124	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.47	62	116	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSSSELVLYN LVPAPQTLNP PQPHAAAAVA VAVSGDLSIS TTVAPPPQEP LRVRTRRPVG 60 SSADRHAKVA GRGRRVRIPA MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGTG 120 VTPEEAPPAP VPVSPVAATA SLMPVPYYTA LLMQPPPTTD SASGSGTAAQ ENNN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.6609	3e-36	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269\|PubMed:9338963}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG023900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823176.1	1e-104	transcription factor PCF1-like
Swissprot	O23875	7e-55	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A3L6Q550	1e-104	A0A3L6Q550_PANMI; Transcription factor PCF1-like
STRING	Pavir.Ga02405.1.p	1e-119	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-32	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG023900.2.p