PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG046400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 518aa    MW: 57765.5 Da    PI: 10.2074
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG046400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.4e-1518107399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          kvl+p  +++s+ l+++ + a++ +g   +  t  + ++ g++W+v++   +  g+ +l++GW eF+ a+g  +g f+vF++  +   + 
  Pavir.7KG046400.2.p  18 KVLLP--SSTSHKLRISDELARHWDGGAGG--TALVVSPLGKVWRVQV--ARDAGGAFLGRGWPEFAAAHGFGAGWFLVFRH--EpGAGV 99 
                          66644..4555669*******777666433..89999***********..*******************************6..447888 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          l+vk+f++
  Pavir.7KG046400.2.p 100 LTVKAFDT 107
                          99999986 PP
2B357.91.8e-18250336286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           k++++s++l + rl++p++f++++g+  ++++  tl+++       rsW+v++ +  ++++  l++GW++F+ +n++kegD+++F +++
  Pavir.7KG046400.2.p 250 MKKEISSSTLWK-RLSVPRNFCKAIGLWRTSEV--TLRTTAYedhghRSWQVRFLFYENRNSGELSRGWRRFCTDNRIKEGDICTFNVIE 336
                          677777777776.6***********66654443..333322223456*******9955555555**********************9765 PP
3B3491.1e-15421505286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k ++++++l+  +l++p++f +++g+  ++++tl+ +  +    rsW+v++    +++r +lt+GW+ F  +n +kegD+++F  ++
  Pavir.7KG046400.2.p 421 LKREISAHMLSD-QLYVPRNFYKAIGLYRASGITLRTTANEDhglRSWQVRF--LVYRNRGTLTRGWRTFWADNMIKEGDICTFNIIK 505
                          566777777766.5***********99999987777666444789*******..66666667**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.89814108IPR003340B3 DNA binding domain
SMARTSM010191.1E-616108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-1616110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1617110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-1518106No hitNo description
PfamPF023621.1E-1218107IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-19244347IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-20246346IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76248348IPR003340B3 DNA binding domain
SMARTSM010192.9E-9250348IPR003340B3 DNA binding domain
PfamPF023621.2E-15251336IPR003340B3 DNA binding domain
CDDcd100179.72E-17251332No hitNo description
SuperFamilySSF1019362.35E-17415516IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-18418516IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547419517IPR003340B3 DNA binding domain
PfamPF023621.1E-12421505IPR003340B3 DNA binding domain
SMARTSM010195.2E-7421517IPR003340B3 DNA binding domain
CDDcd100173.33E-10431501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGSSSGNRGA IAISRHLKVL LPSSTSHKLR ISDELARHWD GGAGGTALVV SPLGKVWRVQ  60
VARDAGGAFL GRGWPEFAAA HGFGAGWFLV FRHEPGAGVL TVKAFDTTCC LREFSRPITA  120
ANPGGGGGSS HRPQFINVLL PPSMEKMGIP PKFVKNYISE VEMGSSVTVL LSPLSKFCRV  180
TVGKDQSSAF ADTKTEEEDP PSSSRKGKGM EKKPGGEENS KRPTSPITSS NKAQLSMNRP  240
VYKVGPPSWM KKEISSSTLW KRLSVPRNFC KAIGLWRTSE VTLRTTAYED HGHRSWQVRF  300
LFYENRNSGE LSRGWRRFCT DNRIKEGDIC TFNVIETTLW HVDITRHGEG QGTISNELEQ  360
SDKTPFSDTE KEDVPSSSRK RKCEDKKPDG EENSKRTKGP TTSLNEAPSS IVYEIGPPSW  420
LKREISAHML SDQLYVPRNF YKAIGLYRAS GITLRTTANE DHGLRSWQVR FLVYRNRGTL  480
TRGWRTFWAD NMIKEGDICT FNIIKPMLWH VDIMRHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG046400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.11e-176putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2S3I6031e-177A0A2S3I603_9POAL; Uncharacterized protein
STRINGPavir.Ga02236.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-11B3 family protein