PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG046400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 410aa    MW: 46893.8 Da    PI: 9.9965
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG046400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18141228186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          + k++++s++l + rl++p++f++++g+  ++++  tl+++       rsW+v++ +  ++++  l++GW++F+ +n++kegD+++F ++
  Pavir.7KG046400.3.p 141 WMKKEISSSTLWK-RLSVPRNFCKAIGLWRTSEV--TLRTTAYedhghRSWQVRFLFYENRNSGELSRGWRRFCTDNRIKEGDICTFNVI 227
                          5677877777776.6***********66654443..333322223456*******9955555555**********************976 PP

                          S CS
                   B3  86 g 86 
                          +
  Pavir.7KG046400.3.p 228 E 228
                          5 PP
2B349.67.3e-16313397286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k ++++++l+  +l++p++f +++g+  ++++tl+ +  +    rsW+v++    +++r +lt+GW+ F  +n +kegD+++F  ++
  Pavir.7KG046400.3.p 313 LKREISAHMLSD-QLYVPRNFYKAIGLYRASGITLRTTANEDhglRSWQVRF--LVYRNRGTLTRGWRTFWADNMIKEGDICTFNIIK 397
                          566777777766.5***********99999987777666444789*******..66666667**********************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-19136239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20138238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76140240IPR003340B3 DNA binding domain
SMARTSM010192.9E-9142240IPR003340B3 DNA binding domain
CDDcd100174.76E-17143224No hitNo description
PfamPF023628.2E-16143228IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-17307408IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-18310408IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547311409IPR003340B3 DNA binding domain
PfamPF023627.5E-13313397IPR003340B3 DNA binding domain
SMARTSM010195.2E-7313409IPR003340B3 DNA binding domain
CDDcd100172.06E-10323393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MCFSLPPWKR WASLPNLSRT TSLKSRWEAR LPSSSARCPN SVVLLSGRIN HQVFGPDGCQ  60
KGYKDQGTSS KEQEQSDDKT TFADTKTEEE DPPSSSRKGK GMEKKPGGEE NSKRPTSPIT  120
SSNKAQLSMN RPVYKVGPPS WMKKEISSST LWKRLSVPRN FCKAIGLWRT SEVTLRTTAY  180
EDHGHRSWQV RFLFYENRNS GELSRGWRRF CTDNRIKEGD ICTFNVIETT LWHVDITRHG  240
EGQGTISNEL EQSDKTPFSD TEKEDVPSSS RKRKCEDKKP DGEENSKRTK GPTTSLNEAP  300
SSIVYEIGPP SWLKREISAH MLSDQLYVPR NFYKAIGLYR ASGITLRTTA NEDHGLRSWQ  360
VRFLVYRNRG TLTRGWRTFW ADNMIKEGDI CTFNIIKPML WHVDIMRHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG046400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2S3I6030.0A0A2S3I603_9POAL; Uncharacterized protein
STRINGPavir.Ga02236.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.17e-12B3 family protein