PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG048700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 190aa MW: 22275.8 Da PI: 9.1789

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG048700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.3	2e-26	28	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fYn+YA e GFsvrk ++++ ++++ei r+fvCs++g+r+ ++ k ++k+r++r +r+gC a++++ ++k g w+v+++ eH+He Pavir.7KG048700.1.p 28 EFYNNYAMEKGFSVRKCYMERDQTTKEICLRRFVCSRQGFRAAKHMKkANKKRKPRDISRCGCAARMVIAQNKeMGLWYVKDFIDEHTHE 117 6**************************************9887665799999*************9999************* PP FAR1 89 la 90 la Pavir.7KG048700.1.p 118 LA 119 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-25	28	119	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVDLSIEALL DYQEIVSKTF RSEKEGYEFY NNYAMEKGFS VRKCYMERDQ TTKEICLRRF 60 VCSRQGFRAA KHMKKANKKR KPRDISRCGC AARMVIAQNK EMGLWYVKDF IDEHTHELAA 120 PDLACLLHSH RRISDEQKAD IIEMEIAGVR KHQIMNILEM QYGGYDKVRC VSRDAYNFCY 180 RYKLGTIAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG048700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466791.2	4e-84	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021321074.1	4e-84	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6Q596	1e-123	A0A3L6Q596_PANMI; Uncharacterized protein
STRING	Pavir.J01563.1.p	2e-86	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-22	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7KG048700.1.p