PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG049200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 256aa    MW: 26479.4 Da    PI: 4.5371
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG049200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof53.84.1e-1727612660
               zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                         l qPryfCk+Crr W +G +lrnvPvGg +rkn++
  Pavir.7KG049200.1.p 27 LGQPRYFCKGCRRNWMQGSTLRNVPVGGRSRKNRA 61
                         67*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.9E-132660IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-72753IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVASPPTEEA AAASNIQANQ LAWQQQLGQP RYFCKGCRRN WMQGSTLRNV PVGGRSRKNR  60
AGGSNSSSAA PPAAAPSSSS NESKKVMNLT QQLLMLPTAT APILTPMPAD FPRVLPSFMS  120
MGGGFEVPSS DYHSLPFPPL SPLFDPGTTP SFLESLTEGL LDSGNNGMTA PPSFGTSDQQ  180
MIGLLQGVDQ TLELPMAAGG GSGLQQWPSL AAQEQQVVGG DGSVDNNCNN NTTNNNGGGA  240
SGGGSGIEYY WQGSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG049200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980592.11e-106dof zinc finger protein PBF
TrEMBLA0A368S7T61e-104A0A368S7T6_SETIT; Uncharacterized protein
STRINGSi026678m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.17e-10Dof family protein