PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG052400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 157aa    MW: 16498.8 Da    PI: 11.3464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG052400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000845072123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  Cg+ F +   L  H  +H
  Pavir.7KG052400.1.p 50 FRCRTCGRAFATFQALGGHRTSH 72
                         89**********99998888777 PP
2zf-C2H216.62.3e-05100122123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg +Fs+   L  H+r+H
  Pavir.7KG052400.1.p 100 HRCDTCGLVFSTGQALGGHMRRH 122
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.385072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.9E-850122No hitNo description
PROSITE profilePS5015710.9495077IPR007087Zinc finger, C2H2
PfamPF139124.6E-95074IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139128.4E-1399124IPR007087Zinc finger, C2H2
SMARTSM003550.025100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MATTTARPTP LATNLLRLFL TLSPASRVIP KQQGQGGGCR ATRLDGAGEF RCRTCGRAFA  60
TFQALGGHRT SHKRPRVRAD GLDLLLGARP GKGAAASGVH RCDTCGLVFS TGQALGGHMR  120
RHRSPPATIK FVALSDDGED DDASHLSTAT SFIKFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG052400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.13e-50zinc finger protein ZAT12
TrEMBLA0A368SBJ98e-49A0A368SBJ9_SETIT; Uncharacterized protein
STRINGPavir.J14296.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-23C2H2 family protein