PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG061000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 338aa    MW: 35967.5 Da    PI: 10.2485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG061000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-31260318259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  Pavir.7KG061000.1.p 260 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPGDPSMLIVTYEGEHRHS 318
                          69************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-19208257IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-32248318IPR003657WRKY domain
PROSITE profilePS5081130.458254320IPR003657WRKY domain
SuperFamilySSF1182903.53E-26257319IPR003657WRKY domain
SMARTSM007743.9E-37259319IPR003657WRKY domain
PfamPF031063.3E-26261317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMTLDLMGRY GRVDEKVAIQ EAAAAGLRGM EHLISQLSRA GTGTGERSSS SPGAAPAQNQ  60
QQPEQSHLQQ QQQQLLLLQE VDCREITDMT VSKFKKVISI LNRTGHARFR RGPVVAQSPG  120
PAEHAARSAP APRPVTLDFT KSVSGYSRDS GFSVSGASSS FLSSVTTGDG SVSNGRGGGG  180
SSSLMLLPPA GAASCGKPPL SSSGAGQKRR CHDHAHSENV AGGKYGATGG RCHCSKRRKH  240
RVKRTIRVPA ISPKVSDIPA DEYSWRKYGQ KPIKGSPYPR GYYKCSTVRG CPARKHVERD  300
PGDPSMLIVT YEGEHRHSPE DPPAPPPLGP LPELPNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20247317271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.143901e-119root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in aleurone cells. In seeds, predominantly present in the plumule, radicle and scutellum of the embryo. {ECO:0000250|UniProtKB:Q0JEE2}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG061000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425790.0BT042579.1 Zea mays full-length cDNA clone ZM_BFb0345E21 mRNA, complete cds.
GenBankEU9669050.0EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826098.10.0WRKY transcription factor WRKY51-like
SwissprotQ6IEN11e-143WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A3L6QBB20.0A0A3L6QBB2_PANMI; Putative WRKY transcription factor 17
STRINGPavir.Ga02680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-88WRKY DNA-binding protein 11