PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG102400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 419aa    MW: 47433.4 Da    PI: 9.4599
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG102400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1263.1e-08501182291
                 FAR1  22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                          +++   +  ++++Cs egk++++ ++  +++++++++  g ka++  +k +  g+   t+++ eHnH+l+p
  Pavir.7KG102400.1.p  50 NRKR-GTDGKDLCCSLEGKHNRKVED-GDRKTSKTSKCDGSKAMVCARKAQdGGRVFFTRIVFEHNHKLNP 118
                          3333.367799***********9999.5555556666667899999999988999*************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-552118IPR004330FAR1 DNA binding domain
PfamPF105512.6E-9226276IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESADIAMNR SSPAISLVSR HVMASQVSIP PSATAPQPSP DSVPAGVKKN RKRGTDGKDL  60
CCSLEGKHNR KVEDGDRKTS KTSKCDGSKA MVCARKAQDG GRVFFTRIVF EHNHKLNPSP  120
SMMKHMRAHK VEDPSVMNLV DTMHASQVPH PNVMHVLRSV AGGAENLHLT ERDIQNRRAA  180
HVREERMDDI LKLMAFFREC KANNQQFFYE FQLDDKNIIK NVFWSHATNQ YSMPLAMFVG  240
FNNKLQNVVF GQALLRDEIA DTFEWLFKQL RACMGARILL LSLLFRNELN QLNTQYPGLS  300
ETLTSVINHP LRPIEFEQAW AAMLDKYEVH ESKVLMKLYD ERNMWVGAYF KEIFCGTMNS  360
TQRSESVNSA APVVASTFYG YNNQLSRVYT RAVYKVFASR LKSSTAFRVC PDPNCNIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG102400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ga02150.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5