PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG106000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 253aa    MW: 27470.4 Da    PI: 10.1676
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG106000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573446.1e-1449143497
               DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                           r+wse De+ +L Gl  ++a++g+ p+   ++a  e  ++  +++++ +++ eK+rrL+ K+ + ++       e   + +++   +el
  Pavir.7KG106000.1.p  49 VRVWSEADEVRILEGLAAYAADHGAPPVRsQLHAALE-GRRLDKAEFTVTEIYEKVRRLRTKYCNLRDArGPPVPEGGADDADEVRKYEL 137
                          69***********************888835555555.56777999*****************999887456677778888999999*** PP

               DUF573  92 skkiWg 97 
                          s  iWg
  Pavir.7KG106000.1.p 138 SAAIWG 143
                          *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-1749143IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MPPAMSGAPD SPREAILLLP APDAAWEKAP RAASQPRAGR GKKPAVGPVR VWSEADEVRI  60
LEGLAAYAAD HGAPPVRSQL HAALEGRRLD KAEFTVTEIY EKVRRLRTKY CNLRDARGPP  120
VPEGGADDAD EVRKYELSAA IWGDQPANVA KKGRSSSAGA MPPKAGGAGA RVRRGFEELQ  180
GLFPNLASKV DKITNDETLQ PVLKRAFELI DDQKAGELDA KVKKHKIREV QAKMNRDALR  240
VEVFKTLIRS MD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.210080.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG106000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825722.11e-140uncharacterized protein LOC112901104
TrEMBLA0A2S3I5041e-138A0A2S3I504_9POAL; Uncharacterized protein
STRINGPavir.J29943.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-08DNA-binding storekeeper protein-related transcriptional regulator