PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG107400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 88aa MW: 9928.29 Da PI: 8.4837

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG107400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.9	3.4e-13	34	75	1	42
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA++ GFs+r+s+s++ k+++ i++rtf+Cs+eg ++ Pavir.7KG107400.1.p 34 QFYNAYARDKGFSIRRSSSHNVKNSTIIKNRTFCCSREGIKS 75 6**************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-9	34	75	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MPMLQTEPTQ VENSTEDRIP KVSMKFCTEE EAYQFYNAYA RDKGFSIRRS SSHNVKNSTI 60 IKNRTFCCSR EGIKSLCYCA LSSSLGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG107400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU062719	7e-41	GU062719.1 Saccharum hybrid cultivar CP72-1210 O-methyltransferase-like protein gene, promoter region and complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020673878.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673879.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673880.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_020673883.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_028549732.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549733.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549734.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549735.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_028549736.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X2
Refseq	XP_028549737.1	3e-17	protein FAR1-RELATED SEQUENCE 7 isoform X3
Refseq	XP_028549738.1	2e-17	protein FAR1-RELATED SEQUENCE 7 isoform X4
TrEMBL	A0A194YJR4	2e-28	A0A194YJR4_SORBI; Uncharacterized protein
TrEMBL	A0A1W0W5Z8	1e-27	A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRING	Pavir.J10159.1.p	5e-59	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	3e-10	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Pavir.7KG107400.1.p