PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG111000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 145aa    MW: 15634.8 Da    PI: 11.5772
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG111000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.71.2e-08118142125
                          XXXXCHHHCHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                          e+elk er kq+NRe+ArrsR+RK+
  Pavir.7KG111000.1.p 118 ERELKGERQKQSNRESARRSRLRKQ 142
                          89**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.1E-5118142No hitNo description
CDDcd147021.09E-7124142No hitNo description
PROSITE patternPS000360125140IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MPPPFSSALR GEGTVQRGCG RHPRYTAAFH SGIPGEPSQA VVVRYAAIES PYPAVKGRSA  60
SKLPVFTPGR VALRPNATPN LNIGIDFWSA SPAVPAVQEE ASHGLALARR DSVTLLVERE  120
LKGERQKQSN RESARRSRLR KQVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRSRLRK
2134141RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG111000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804569.13e-50DNA-binding protein EMBP-1-like
SwissprotP250329e-22EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3L6QQ932e-49A0A3L6QQ93_PANMI; DNA-binding protein EMBP-1-like
TrEMBLA0A3L6T6W42e-49A0A3L6T6W4_PANMI; DNA-binding protein EMBP-1-like
STRINGPavir.Bb00931.1.p5e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.15e-13basic region/leucine zipper transcription factor 68