PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG115200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1015aa    MW: 113522 Da    PI: 6.5489
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG115200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.7e-55121273117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7KG115200.2.p  12 EEaRTRWLRPSEVYYILQNHERFPITHEAPKEPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 101
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7KG115200.2.p 102 PCFQRRCFWMLEPAYEHIVLVQYREV 127
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6137133IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038599.0E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-6438527IPR013783Immunoglobulin-like fold
PfamPF018331.4E-5438508IPR002909IPT domain
SuperFamilySSF484031.04E-15465513IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-16633728IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.04E-15633730IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.016635727IPR020683Ankyrin repeat-containing domain
CDDcd002042.13E-9640727No hitNo description
PfamPF127961.3E-6651728IPR020683Ankyrin repeat-containing domain
SMARTSM002489.7E-5668697IPR002110Ankyrin repeat
PROSITE profilePS5008811.301668700IPR002110Ankyrin repeat
SMARTSM0001527788810IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602789818IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712847876IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.31E-6847894IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517848868IPR000048IQ motif, EF-hand binding site
PfamPF006120.015849867IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731870898IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5871891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLR PSEVYYILQN HERFPITHEA PKEPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PPESLSSLGY PHAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKGGGS LLSIPELGQT CREQTTEVHG ADNGNSKNKS GLNVALKKIA  240
EQLSLGDDDD DDYIYTNQVQ PLGLATNIEP TDKKDDNQIK QIQPEGTQKG LGRNIAPSWE  300
DVLHSSSGLP TPSIYQSDVQ YQQNSEYHPP GSLDSSDLRI QLSAAKRFLL GPEASIDSPS  360
LNFMLRSKEN GRTDILSAHE SRLQSFLNTD WKTKAPLTFQ SNSQGSEITE LLFDRGQLEP  420
YSRADTRLTL GQIKQFNIRE ISPEWAFSYE ITKVIITGDF LCDPSNLCWA VMFGDSEVPA  480
EIVQLGVLRC HTPLHSSGKL RVCITSGNRE VCSEFKEFEF HSKPTSSGFS DLAPSSRSLK  540
SSEELLFLAK FARMLLSENG SSEVPDSDPQ SGQCPKLRMN EELWDRLIDE LKLGCENPLS  600
TVDQIMEELL KSRLQQWLSV KLKGFNGTAS SLSKHDQGII HLISALGYEW ALSSVLSAGV  660
GLNFRDSNGW TALHWAAYFG REKMVAALLA AGASATAVTD PTAQDPVGKT AAFLASQRGH  720
TGLAGYLSEV SLTSYLASLT IEESDVSKGS AEIEAERAVE SVSQRSAQLH GGTEDELSMK  780
DSLAAVRNAA QAAARIQNAF RAFSFRKRQQ KTARLRDEYG MTQEDIDELA AASRLYHQAH  840
ASSGQFYDKA AVSIQKKYKG WKGRKHFLNM RRNAVKIQAH VRGHQVRKKY RTIVSTVSVL  900
EKVILRWRRK GHGLRGFRAE KQPMVGAVEE DDEEDDDFDD DEAVKVFRRQ KVDQAVKEAV  960
SRVLSMVDST EARMQYRRML EEFRRASAEL GGSHEATSIF DSDLELLGIN NFML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG115200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3I6190.0A0A2S3I619_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains