PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG115200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 990aa    MW: 110955 Da    PI: 6.5486
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG115200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.5e-55121273117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7KG115200.3.p  12 EEaRTRWLRPSEVYYILQNHERFPITHEAPKEPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 101
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7KG115200.3.p 102 PCFQRRCFWMLEPAYEHIVLVQYREV 127
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.6137133IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.4E-6413502IPR013783Immunoglobulin-like fold
PfamPF018331.4E-5413483IPR002909IPT domain
SuperFamilySSF484039.94E-16440488IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-16608703IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.94E-16608705IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.016610702IPR020683Ankyrin repeat-containing domain
CDDcd002042.01E-9615702No hitNo description
PfamPF127961.3E-6626703IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301643675IPR002110Ankyrin repeat
SMARTSM002489.7E-5643672IPR002110Ankyrin repeat
SMARTSM0001527763785IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602764793IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.84E-6822869IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.712822851IPR000048IQ motif, EF-hand binding site
SMARTSM0001517823843IPR000048IQ motif, EF-hand binding site
PfamPF006120.015824842IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731845873IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-5846866IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MSQSFDINVL REEARTRWLR PSEVYYILQN HERFPITHEA PKEPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PPESLSSLGY PHAIYGNQYL SSTSGTSEGS ESHQSYSNLS  180
SVTETCREQT TEVHGADNGN SKNKSGLNVA LKKIAEQLSL GDDDDDDYIY TNQVQPLGLA  240
TNIEPTDKKD DNQIKQIQPE GTQKGLGRNI APSWEDVLHS SSGLPTPSIY QSDVQYQQNS  300
EYHPPGSLDS SDLRIQLSAA KRFLLGPEAS IDSPSLNFML RSKENGRTDI LSAHESRLQS  360
FLNTDWKTKA PLTFQSNSQG SEITELLFDR GQLEPYSRAD TRLTLGQIKQ FNIREISPEW  420
AFSYEITKVI ITGDFLCDPS NLCWAVMFGD SEVPAEIVQL GVLRCHTPLH SSGKLRVCIT  480
SGNREVCSEF KEFEFHSKPT SSGFSDLAPS SRSLKSSEEL LFLAKFARML LSENGSSEVP  540
DSDPQSGQCP KLRMNEELWD RLIDELKLGC ENPLSTVDQI MEELLKSRLQ QWLSVKLKGF  600
NGTASSLSKH DQGIIHLISA LGYEWALSSV LSAGVGLNFR DSNGWTALHW AAYFGREKMV  660
AALLAAGASA TAVTDPTAQD PVGKTAAFLA SQRGHTGLAG YLSEVSLTSY LASLTIEESD  720
VSKGSAEIEA ERAVESVSQR SAQLHGGTED ELSMKDSLAA VRNAAQAAAR IQNAFRAFSF  780
RKRQQKTARL RDEYGMTQED IDELAAASRL YHQAHASSGQ FYDKAAVSIQ KKYKGWKGRK  840
HFLNMRRNAV KIQAHVRGHQ VRKKYRTIVS TVSVLEKVIL RWRRKGHGLR GFRAEKQPMV  900
GAVEEDDEED DDFDDDEAVK VFRRQKVDQA VKEAVSRVLS MVDSTEARMQ YRRMLEEFRR  960
ASAELGGSHE ATSIFDSDLE LLGINNFML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG115200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823459.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3I6190.0A0A2S3I619_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-146Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains