PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG115200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1018aa    MW: 113867 Da    PI: 6.6091
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG115200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.7e-55151303117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+n
  Pavir.7KG115200.4.p  15 EEaRTRWLRPSEVYYILQNHERFPITHEAPKEPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQN 104
                          5569************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p fqrrc+w+Le ++e+ivlv+y+ev
  Pavir.7KG115200.4.p 105 PCFQRRCFWMLEPAYEHIVLVQYREV 130
                          ************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.61310136IPR005559CG-1 DNA-binding domain
SMARTSM010767.4E-6913131IPR005559CG-1 DNA-binding domain
PfamPF038599.0E-4716129IPR005559CG-1 DNA-binding domain
PfamPF018331.4E-5441511IPR002909IPT domain
Gene3DG3DSA:2.60.40.105.6E-6441530IPR013783Immunoglobulin-like fold
SuperFamilySSF484031.04E-15468516IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-16636731IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.04E-15636733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.016638730IPR020683Ankyrin repeat-containing domain
CDDcd002042.10E-9643730No hitNo description
PfamPF127961.3E-6654731IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301671703IPR002110Ankyrin repeat
SMARTSM002489.7E-5671700IPR002110Ankyrin repeat
SMARTSM0001527791813IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602792821IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712850879IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.78E-6850897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001517851871IPR000048IQ motif, EF-hand binding site
PfamPF006120.015852870IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6872894IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731873901IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-5874894IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MSSRLFGFDI NVLREEARTR WLRPSEVYYI LQNHERFPIT HEAPKEPPSG SLFLYNRRVN  60
RYFRRDGHTW RRKKDGRTVG EAHERLKVGN VDALSCYYAH GEQNPCFQRR CFWMLEPAYE  120
HIVLVQYREV AEGRYYSSQL SNGPPESLSS LGYPHAIYGN QYLSSTSGTS EGSESHQSYS  180
NLSSVTEVSS YSGNKEYNKG GGSLLSIPEL GQTCREQTTE VHGADNGNSK NKSGLNVALK  240
KIAEQLSLGD DDDDDYIYTN QVQPLGLATN IEPTDKKDDN QIKQIQPEGT QKGLGRNIAP  300
SWEDVLHSSS GLPTPSIYQS DVQYQQNSEY HPPGSLDSSD LRIQLSAAKR FLLGPEASID  360
SPSLNFMLRS KENGRTDILS AHESRLQSFL NTDWKTKAPL TFQSNSQGSE ITELLFDRGQ  420
LEPYSRADTR LTLGQIKQFN IREISPEWAF SYEITKVIIT GDFLCDPSNL CWAVMFGDSE  480
VPAEIVQLGV LRCHTPLHSS GKLRVCITSG NREVCSEFKE FEFHSKPTSS GFSDLAPSSR  540
SLKSSEELLF LAKFARMLLS ENGSSEVPDS DPQSGQCPKL RMNEELWDRL IDELKLGCEN  600
PLSTVDQIME ELLKSRLQQW LSVKLKGFNG TASSLSKHDQ GIIHLISALG YEWALSSVLS  660
AGVGLNFRDS NGWTALHWAA YFGREKMVAA LLAAGASATA VTDPTAQDPV GKTAAFLASQ  720
RGHTGLAGYL SEVSLTSYLA SLTIEESDVS KGSAEIEAER AVESVSQRSA QLHGGTEDEL  780
SMKDSLAAVR NAAQAAARIQ NAFRAFSFRK RQQKTARLRD EYGMTQEDID ELAAASRLYH  840
QAHASSGQFY DKAAVSIQKK YKGWKGRKHF LNMRRNAVKI QAHVRGHQVR KKYRTIVSTV  900
SVLEKVILRW RRKGHGLRGF RAEKQPMVGA VEEDDEEDDD FDDDEAVKVF RRQKVDQAVK  960
EAVSRVLSMV DSTEARMQYR RMLEEFRRAS AELGGSHEAT SIFDSDLELL GINNFML*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG115200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823460.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A2S3I6470.0A0A2S3I647_9POAL; Uncharacterized protein
STRINGPavir.Ga01952.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-145Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains