PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG117800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 214aa    MW: 22859.3 Da    PI: 4.4506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG117800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.2e-073371855
                  AP2 18 eIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         e   +   +  +r ++ +lg+f ta +Aa+a+ aa+++l+g
  Pavir.7KG117800.1.p  3 E---W---NlrHRgAQLWLGTFATALDAARAYAAAARALYG 37
                         4...6...333235***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.769145IPR001471AP2/ERF domain
SMARTSM003802.3E-4351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-11644IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-8744IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCEWNLRHRG AQLWLGTFAT ALDAARAYAA AARALYGDCA RLNLMPALPQ AAAAAAANNN  60
MVVMKASPAA SPSSPGRHHQ YYNYKQQQEP VMMAAAMMHS APCSSADDAS PNSNCSNYSN  120
SSSSTAATPT ATMQQMIADE LAAAVDHSHQ QQQAEAEDFE DYVTQLPKAE DFGLGGFQEV  180
PPPEVFDEAP GDGLWDHTVA WPPSPAMMLD SARP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG117800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680796.18e-44dehydration-responsive element-binding protein 2C-like
TrEMBLA0A2S3H7M23e-71A0A2S3H7M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7E7543e-71A0A2T7E754_9POAL; Uncharacterized protein
STRINGPavir.Ga01837.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454