PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG131100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 295aa    MW: 33142.1 Da    PI: 7.9597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG131100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-19137219187
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ++k+ ++ ++l+++ l lp  f++++g+ k++  t+tl+++   sW+v+   ++k  +y+l  GW+ F+k+n++kegD+++F ++++
  Pavir.7KG131100.1.p 137 WIKKQINTNTLEND-LALPIAFCDAIGLHKPS--TITLKTTMTGSWQVRGVPCNK-HSYLLVHGWRTFCKENNVKEGDICTFNVIKT 219
                          67888999999999.************99655..8***************54333.46*************************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.164162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-9364IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-8764IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21132229IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-21133229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21136230IPR003340B3 DNA binding domain
SMARTSM010197.1E-10138230IPR003340B3 DNA binding domain
PfamPF023625.1E-15139224IPR003340B3 DNA binding domain
CDDcd100172.96E-11151221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAVVFGPLGK VNSIKLEMDE SDVFFAGGWA QFLAFHCITA SNTLVLRYED NMVFTVKVFE  60
PDGCQRKPKH KDNIMEQNEQ EINLEERQEA LSVPIWKCKS ENDLPCSEVH KPKGFMPSLN  120
EASLLGNSFY EIGQPSWIKK QINTNTLEND LALPIAFCDA IGLHKPSTIT LKTTMTGSWQ  180
VRGVPCNKHS YLLVHGWRTF CKENNVKEGD ICTFNVIKTT MWHVVITRSD IPKPLETAFA  240
SSTKCKSIDD RPISEGQEMS KGSISSSKKA SSQKKIVYEI GPLAWIKKKD IKHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG131100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.11e-82putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PY541e-175A0A3L6PY54_PANMI; Uncharacterized protein
STRINGPavir.J18467.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-10B3 family protein