PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG131400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 283aa    MW: 32672.9 Da    PI: 10.3133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG131400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.5e-1642119186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+ ++++++++  lvl  +f++++g+ + +  +ltl++    s++ + + +++ ++y++tkGW++F+++n Lk gD+++F +++
  Pavir.7KG131400.1.p  42 WIKKVINANTHEKY-LVLATNFCDAIGLRESC--MLTLKT----SMDSTTS-WQNCRSYLITKGWRRFCQENSLKKGDICTFNVIE 119
                          67888888888876.************99655..788887....7888885.666779************************9765 PP
2B352.49.9e-17191271386
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          k++++  + ++ rl+lp  f++++g+++++++tl+   +s  sW+ ++i  ++s+++v   G k+F+++ng+k+gD+++Fk ++
  Pavir.7KG131400.1.p 191 KKEINMWAIQN-RLYLPPVFCKAIGIQEPCTITLKTSMSSTTSWQARVIPYNNSSHHV--CGLKRFCQDNGIKVGDVCTFKIVD 271
                          56655555555.7**************99988888778999*******8888888887..78*******************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-1736131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1737129IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001343132IPR003340B3 DNA binding domain
CDDcd100172.20E-1043115No hitNo description
PfamPF023621.5E-1245119IPR003340B3 DNA binding domain
PROSITE profilePS508639.64391131IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-16186279IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0013190282IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-15198279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-10199268No hitNo description
PfamPF023629.0E-15200279IPR003340B3 DNA binding domain
PROSITE profilePS508639.023201282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MHMSKNKWSR SRRNKRPNGS RSSLNKAAFH RKSFYKIGPP SWIKKVINAN THEKYLVLAT  60
NFCDAIGLRE SCMLTLKTSM DSTTSWQNCR SYLITKGWRR FCQENSLKKG DICTFNVIET  120
TVWYVIITRY KEKIDQPCYE KPSASSMKRK REDDRSISEE QKRPKGFMTS WCKASSKTGC  180
IFEIGPPAWI KKEINMWAIQ NRLYLPPVFC KAIGIQEPCT ITLKTSMSST TSWQARVIPY  240
NNSSHHVCGL KRFCQDNGIK VGDVCTFKIV DTTLWHVIIE PR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.289724e-73callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG131400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826051.11e-180putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T8IBQ81e-179A0A2T8IBQ8_9POAL; Uncharacterized protein
STRINGPavir.J14658.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-10B3 family protein