PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG134200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 364aa    MW: 38707.3 Da    PI: 5.9737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG134200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-11151195655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             Er+RR r+++++ eLr+l+P+      +K++Ka+i+  Av Y+++Lq
  Pavir.7KG134200.1.p 151 VVSERKRRVRMKERLYELRSLVPNI-----TKMDKASIVADAVVYVRNLQ 195
                          567*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-16142213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15142212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-13142196No hitNo description
PROSITE profilePS5088815.504145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-8152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDMEQQLHQL LHFSPQEHLM ASPGFLAVGG GYAAHFPAGG FVEPLGDAGG GIHDGGSWAV  60
EDLLQLGAEL FGGDVVSVVG TGDHQPWQQL DGNNGGSPDD TPPPSVSMDG DGSPPPGGEQ  120
GAGELATETE PHRDDDASPA TRKRRDRSKT VVSERKRRVR MKERLYELRS LVPNITKMDK  180
ASIVADAVVY VRNLQARAGK LKEEVAALEA RPRSSPAGWH EQEQQHGGRA AAAAGRRLQQ  240
YRGGHGARLA RVGAVQAGEG RFFVTVECER RDGVAVPLCA AVESLACFRV ESSSLVRSGP  300
DRVVSTLTLK VSEQVVGAAT IGEGSVRHWV MSALLEEGFR PEATVEISSR STCPPISWCL  360
DSV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142157KRRDRSKTVVSERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG134200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8350401e-64CT835040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK60.0A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.Ga01979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-39FER-like regulator of iron uptake