PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG138900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 167aa    MW: 18116.6 Da    PI: 9.7422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG138900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12344854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          ErrRR+r+N++f++Lr+llP+       K +Ka++L  ++eY+++L
  Pavir.7KG138900.1.p  3 SERRRRERLNESFQTLRSLLPPG-----SKKDKATVLASTTEYMHKL 44
                         6********************95.....599************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.059144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-13150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-61044No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MISERRRRER LNESFQTLRS LLPPGSKKDK ATVLASTTEY MHKLIADLSE LEKRNRELEA  60
QLGLLPLETQ QLAGSGDDSS ERVVRVDVTA GASTSAGGGQ AQVVSIRVAV RAECDLSEVV  120
VATLAGIKNT GRFAVVTVDA RQQRSSGHAQ VSITLRVEVW TTPRYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
138ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG138900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812545.18e-71putative transcription factor bHLH041 isoform X1
RefseqXP_025812546.16e-71putative transcription factor bHLH041 isoform X2
TrEMBLA0A2T7DXC94e-72A0A2T7DXC9_9POAL; Uncharacterized protein
TrEMBLA0A3L6PIY51e-71A0A3L6PIY5_PANMI; Uncharacterized protein
STRINGPavir.J30600.1.p9e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-15bHLH family protein