PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG161600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 164aa    MW: 18355.6 Da    PI: 7.2514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG161600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44.1e-3471241128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGf+F P+deel+v++L++k++  +++  ++i+++ +++++Pw+L+ k+ +  ++wyfFs++         ++r+t +gyW++   d+
  Pavir.7KG161600.2.p   7 LPPGFHFFPSDEELIVHFLRRKASLLPCQP-DIIPTILLNHYDPWELNDKALQAGNQWYFFSHAT--------QSRVTPNGYWSSICADE 87 
                          79*************************999.99**************966667789******975........5799************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s +g ++glkktLvf  g++++g +t+W+mhey+l
  Pavir.7KG161600.2.p  88 TVKS-GGCNIGLKKTLVFSIGESSEGIETNWIMHEYHL 124
                          ***9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-424129IPR003441NAC domain
PROSITE profilePS5100536.2157146IPR003441NAC domain
PfamPF023651.7E-228124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGGASDLPPG FHFFPSDEEL IVHFLRRKAS LLPCQPDIIP TILLNHYDPW ELNDKALQAG  60
NQWYFFSHAT QSRVTPNGYW SSICADETVK SGGCNIGLKK TLVFSIGESS EGIETNWIMH  120
EYHLLDGRKV SSSSTSTSSS RKLHREKGHS NTVRATYTFV YFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-33713420155NAC domain-containing protein 19
3swm_B4e-33713420155NAC domain-containing protein 19
3swm_C4e-33713420155NAC domain-containing protein 19
3swm_D4e-33713420155NAC domain-containing protein 19
3swp_A4e-33713420155NAC domain-containing protein 19
3swp_B4e-33713420155NAC domain-containing protein 19
3swp_C4e-33713420155NAC domain-containing protein 19
3swp_D4e-33713420155NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG161600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823281.11e-100NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK65e-46NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3L6PXI41e-100A0A3L6PXI4_PANMI; NAC transcription factor 29-like
STRINGPavir.Ga01785.1.p1e-111(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-48xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]