PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG167400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 204aa    MW: 23116.4 Da    PI: 9.5725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG167400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-151191911386
                          TT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          + + +l   f++++g+ +++  ++tl++   s rsW+v+ +   k ++y +++GWk+F+++n+Lk+gD++ F +++
  Pavir.7KG167400.1.p 119 NFLQSLAAAFCNAIGLWEPC--MITLKNsmNSTRSWQVRSN-PYKHCSYQIGSGWKRFCQDNRLKQGDVCAFNVIE 191
                          455589999******99888..56666633677*******3.334467************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.87156IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-91261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-81263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-1798200IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0075110203IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-14120200IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-12122191IPR003340B3 DNA binding domain
CDDcd100173.08E-9127193No hitNo description
PROSITE profilePS5086311.293140203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
PTWQILARWL EVNQSGMSFA GGWSEFLSFH GITEGNVLLL KYQSNMVFTV KFFGPDGCQI  60
QSKHKETIIQ QTPTLPDTEK QREPTSASEK KRKSKNDSTQ NSSGVKKLKT CRSLLTETNF  120
LQSLAAAFCN AIGLWEPCMI TLKNSMNSTR SWQVRSNPYK HCSYQIGSGW KRFCQDNRLK  180
QGDVCAFNVI ETNLWHVDIM HGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG167400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975299.12e-60putative B3 domain-containing protein Os04g0347400 isoform X3
RefseqXP_022683932.12e-60putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A2T8IBP25e-96A0A2T8IBP2_9POAL; Uncharacterized protein
STRINGPavir.Ga02705.1.p3e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-13B3 family protein