PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG167700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 241aa    MW: 26941.3 Da    PI: 10.6902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG167700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-113831598
                         -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                          +++p +f+++h  ++++++ + ++  ++g+++++kl  +  ++ +++t+GW++F   +++ e   ++++++g++ f  +vkvf 
  Pavir.7KG167700.1.p  3 KMIIPANFVQQHiPKEHRNNCMAIVLGPNGKVYNIKL--ETDRSDMFFTGGWSQFMVFHDITESNALMIRYEGNMFF--TVKVFG 83
                         589*********9556667779999************..88888899**************************9999..888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-4185IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35185IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-15386IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-9382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-13385IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-13382No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEKMIIPANF VQQHIPKEHR NNCMAIVLGP NGKVYNIKLE TDRSDMFFTG GWSQFMVFHD  60
ITESNALMIR YEGNMFFTVK VFGSDGFQRD SKQKENRVQQ RSTLPHSEKL QKASSVSIQK  120
CKRKNKTSLG RNSIYKIGPP SWIKKQINAN SLEKHLALAK AFCDAIGLQE PCTITLRTSR  180
TDGISLGLCV DSHAKIAATC LCRAGGSSAR RTISRKGIPA PSMSSKPHCG MYLSRLMRKR  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.357365e-97leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG167700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.11e-113putative B3 domain-containing protein Os04g0347400
TrEMBLA0A2T7CTG21e-115A0A2T7CTG2_9POAL; Uncharacterized protein
STRINGPavir.Ga02461.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-09B3 family protein