PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG167700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 150aa    MW: 16995.7 Da    PI: 9.8503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG167700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-1947129186
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          ++k+++++++ +++ l+lp +f++++g+ +++ +tl+  ++s++sW+ +l  + +++++ l +GWk+F+ +ng+++gD+++ + ++
  Pavir.7KG167700.2.p  47 WIKKEINASTIENH-LSLPLPFCQAIGLRQRCMITLKTSTSSSKSWQARL--NLYQNGCQLVGGWKSFCLDNGIRVGDVCTMQIIE 129
                          7899*********9.*****************99999999999*******..7777778899*******************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-1845140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.16646141IPR003340B3 DNA binding domain
PfamPF023622.2E-1547130IPR003340B3 DNA binding domain
CDDcd100177.29E-948131No hitNo description
SMARTSM010197.4E-748141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1850139IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNQFCYDSPK SKKDKSNTNG QKMLQGFMNY LNKSRTKSVF EIGPPAWIKK EINASTIENH  60
LSLPLPFCQA IGLRQRCMIT LKTSTSSSKS WQARLNLYQN GCQLVGGWKS FCLDNGIRVG  120
DVCTMQIIET TLWNVMVDRR EDRTINPPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG167700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825227.16e-85putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6QA512e-86A0A3L6QA51_PANMI; Putative B3 domain-containing protein
STRINGPavir.J16340.1.p1e-89(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-08B3 family protein