PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG175300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 412aa    MW: 43133.9 Da    PI: 6.1009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG175300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.67.9e-1478159286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++spk   qCk++++ l+k+yk +++   +       ++++fd+l+
  Pavir.7KG175300.1.p  78 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKSPKsdvQCKNRIDTLKKKYKVERAKPVS-------SWQFFDRLD 159
                          *************************************888999998865559*************99887775.......599999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2276160No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDDDDDVSPD ASPSPASSPG APSAALPVAD PVTVASAPPG GAYPVALPIH RTAASLYATA  60
SGGGGGGGGG GGGREDAWSE GATSALIDAW GERFVALGRG SLRHPQWQEV ADAVSSRDGY  120
SKSPKSDVQC KNRIDTLKKK YKVERAKPVS SWQFFDRLDV LLAPTYGSKP GSVSGGSGGN  180
NSNSRSPLPA ALRMGFPQRS RTPLMPSAAA AAAKRRAPSP EPSVSSESSD GFPPVPALPA  240
ANGKRRRTDE GRADGGSGGD RTQGLRDLAQ AIRRLGEAYE RVEATKLEQA AEMERQRIDF  300
AQELESQRVQ FFLNAQMELT QAKNHASPAA AAIPAGATTV GGSSRRMSMA NDAGGSSNHH  360
SRYRCGHGDR HHHAPCSHYQ QYHDNNHAAA AASEGDQSEE EDDEEEEEES Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.323250.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG175300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.10.0trihelix transcription factor ASIL2
TrEMBLA0A3L6PYH40.0A0A3L6PYH4_PANMI; Trihelix transcription factor ASIL2-like
STRINGSi010246m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-32sequence-specific DNA binding transcription factors