PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG180900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 227aa    MW: 25116.3 Da    PI: 6.4122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG180900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.52e-164687341
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE- CS
                 WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers 41
                         Dg+ WrKYGqK++k++++pr Y+rC+++   +C++ k v++ 
  Pavir.7KG180900.1.p 46 DGHLWRKYGQKVIKDAPHPRLYFRCSYRedrHCQASKLVQQV 87
                         9**************************98889*****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-153096IPR003657WRKY domain
SuperFamilySSF1182901.31E-173796IPR003657WRKY domain
SMARTSM007741.6E-214497IPR003657WRKY domain
PROSITE profilePS5081115.0434686IPR003657WRKY domain
PfamPF031067.8E-154695IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
RKQQLNQPYG QGGLSLFSPG PARRDARKRR KDKHTWIKHT LTPYFDGHLW RKYGQKVIKD  60
APHPRLYFRC SYREDRHCQA SKLVQQVTYM YEHTCNEAPV VVPTPGVEAE VEPPASGGGL  120
VLMFGSSGGG SMCLPIICPA AHNVVVMVVP SFPIIESSSS PTPPWTDNED GTLTWDWDSS  180
TYDLLDGHLQ LDDHVQFSGS SLSWNTDGSA LDLQSMGIIE VEGVTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631RKRRKD
22632RKRRKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG180900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978045.16e-90probable WRKY transcription factor 48
TrEMBLA0A368RUM41e-88A0A368RUM4_SETIT; Uncharacterized protein
STRINGPavir.Ga01476.1.p1e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.15e-15WRKY DNA-binding protein 66