PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG184900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 232aa    MW: 26266.7 Da    PI: 9.1877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG184900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.82.8e-2060120359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                          Dg+ WrKYGqK++k++++pr Y+rC+++   +C++ k v++  ++dp + ++tY  eH+++
  Pavir.7KG184900.1.p  60 DGHLWRKYGQKVIKDAPHPRLYFRCSYRedrHCQASKLVQQVtHDDPPLYDVTYMYEHTCN 120
                          9**************************99999*******986157899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2144120IPR003657WRKY domain
SuperFamilySSF1182905.75E-2151120IPR003657WRKY domain
SMARTSM007741.3E-2958121IPR003657WRKY domain
PROSITE profilePS5081116.00860104IPR003657WRKY domain
PfamPF031061.2E-2260119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEIKRMATLP GLLKRKQQLN QPYGQGGLSL SSPGPARRDG RKRRKDKHTW IKHTLTPYFD  60
GHLWRKYGQK VIKDAPHPRL YFRCSYREDR HCQASKLVQQ VTHDDPPLYD VTYMYEHTCN  120
EAPVVVPTPG VEAEVEPPAS GGGLVLMFGS SGGGHHHRDA RMQLQEERQQ CHRYPRQFLM  180
MNSPDHPNSS QQCAFPSSVP PPTTSWSWSS PSFPIIESSS SPTPPWLCLD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15601191068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RKRRKD
24046RKRRKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG184900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978045.11e-111probable WRKY transcription factor 48
TrEMBLA0A368RUM41e-110A0A368RUM4_SETIT; Uncharacterized protein
STRINGSi012735m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80590.12e-19WRKY DNA-binding protein 66