PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG185700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 388aa    MW: 40966.2 Da    PI: 12.3574
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG185700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3158.11.1e-48513329160
                          XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3  29 eaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknli 118
                          +++ ++ k++ +++++rrk+m raQDg++++Mlk+me+cna+GfvYg + e g pv+g+sdsLr+WWk++v fdr+gp a+      + +
  Pavir.7KG185700.1.p   5 SSSSSKDKEESPENRYRRKAMLRAQDGVIRHMLKMMEACNARGFVYGVVGEDGVPVSGSSDSLRGWWKDDVGFDRAGPLALLAA--HQQA 92 
                          4456788999**********************************************************************9966..5667 PP

                          XXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TT CS
                 EIN3 119 lsgesslqtersseshslselqDTtlgSLLsalmqhcdppqr 160
                          ++ +s + + + s  h l+++qD+tlgSLLsal+qhc+pp  
  Pavir.7KG185700.1.p  93 AEPGSPMAA-AASFLHGLHDIQDSTLGSLLSALIQHCEPPPA 133
                          777777745.99***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.5E-554133No hitNo description
Gene3DG3DSA:1.10.3180.102.3E-8101136IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.05E-8106140IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLAASSSSSK DKEESPENRY RRKAMLRAQD GVIRHMLKMM EACNARGFVY GVVGEDGVPV  60
SGSSDSLRGW WKDDVGFDRA GPLALLAAHQ QAAEPGSPMA AAASFLHGLH DIQDSTLGSL  120
LSALIQHCEP PPAELPPGPG PGAAVVADGA GALVGHAGRG AGAPGRAALP EAARPQEGLE  180
DLAAERGDQA PVPALRPDAQ ARVAVQAAAA QDERPGRRDL VQGHRAGGGA RPPRAARPAD  240
HADRGGGGRQ GAGHRRRPLA TCGGARRQAQ APGRTRERRH GRRRRRRRRQ GVAGAAGHRV  300
CPRCGPQLDR RAHEALLPMP AGARRRRRRA RGEGRGGGRR RRPRAAQRRR AAGGAPRRHA  360
PPRSPAARRR RAGARRRRAP PQPAGGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275288RERRHGRRRRRRRR
2278287RHGRRRRRRR
3280289GRRRRRRRRQ
4281288RRRRRRRR
5282288RRRRRRR
6323330RRRRRRAR
7324341RRRRRARGEGRGGGRRRR
8326341RRRARGEGRGGGRRRR
9338349RRRRPRAAQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG185700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.16e-31EIL family protein