PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG201700.6.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 619aa    MW: 65919.1 Da    PI: 7.8269
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG201700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30280337260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g+H h+k
  Pavir.7KG201700.6.p 280 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGTHSHPK 337
                          8****************************************.***************85 PP
2WRKY1054e-33493551159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Pavir.7KG201700.6.p 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 551
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.54274338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-26274338IPR003657WRKY domain
SuperFamilySSF1182907.59E-25275338IPR003657WRKY domain
SMARTSM007743.0E-33279337IPR003657WRKY domain
PfamPF031062.5E-23280336IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-37478553IPR003657WRKY domain
SuperFamilySSF1182906.15E-29485553IPR003657WRKY domain
PROSITE profilePS5081137.539488553IPR003657WRKY domain
SMARTSM007744.0E-38493552IPR003657WRKY domain
PfamPF031062.4E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MEGHVGMQEG RDPNPGPSSL MRGLQTEAFL PDTEVAKAGF EKDGLSAAIR SPREEGRSLP  60
MTPQFGHKSS PGSTLAERMQ ARAGFRVPKL SMPFSTAVAA DNSVPGAPSP YLTIPPGLSP  120
ATLLDSPVFI SNAMGQASPT TGKLFMLGST NDNDPIRYGG PLLGDGPDSF SFKPLDLKSS  180
HYTAEGKKPP LPSTHVSVKT ETKIQPVQEA NLLGQLNQQN HSRQSNMKSG SHDPNSKLSR  240
LATVTGAGND HVSSPHSQPA EEGDTRGDYH PAMAATTPAE DGYSWRKYGQ KQVKHSEYPR  300
SYFKCTHPNC QVKKKVERSH EGHITEIIYK GTHSHPKPAQ SRRPGVPPVH PFVEGAQADA  360
PDNPRPHTNT AEARQAWHNN AGVKDLPGDG MDAASPPSVP GELCDSSASM QIHDAGGVDA  420
TSAATAGSDE VDGEDRVTHG SMSQGGGGAD ADGDELESKR RKLESYTIDM SAASRAVREP  480
RVVIQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HPGCSVRKHV ERASHDLKSV  540
ITTYEGKHNH EVPAARNSGG HPSAATAAGA AAGRRPEHPS VHDGLMRHLA GGCGGAPFGL  600
RPAPPSRDPM TPMLNYPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36280554878Probable WRKY transcription factor 4
2lex_A1e-36280554878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG201700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
TrEMBLA0A2T7CW720.0A0A2T7CW72_9POAL; Uncharacterized protein
STRINGPavir.J36042.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-121WRKY DNA-binding protein 2