PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG204700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 801aa    MW: 91168.4 Da    PI: 9.1245
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG204700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.56.9e-2152137190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH++
  Pavir.7KG204700.1.p  52 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNAsENHWEVVFVELEHNHPC 136
                          6****************99988..9999**************99887...8999****************999***************97 PP

                 FAR1  90 a 90 
                          +
  Pavir.7KG204700.1.p 137 N 137
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1952137IPR004330FAR1 DNA binding domain
PfamPF105519.0E-25261354IPR018289MULE transposase domain
PfamPF044341.0E-6531574IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.78542578IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MDTLQSDPYS RSSLQPYRDA SVSFENNTVL DKHEVVSPRV GMTFETVDLA YQFYLEYGYR  60
AGFGVSKRTS HSVDGVKYRA TFVCYKGGIA RIKPGLKARR RLVAKTGCKA MMVVKFNASE  120
NHWEVVFVEL EHNHPCNPEM VRFMMCFKDL PDWQREHRPF NAKTRLNPKI HSGRGRPPNQ  180
NKDFMVRSFS QSNYSIEGAG KAGKLRFAEG DVDALLVFFD KMQAQNSNFF YNWDMDDEGR  240
LKNVCWVDAR SRVAYQHFCD VICFDTVYLT YQFLIPLVAF LGINHHGQFV LLGCGLLGDE  300
SPETFAWLFK KWLKCMNDKA PEAIITTHSR PVVKAVSEVF PNTRHRYNLW HIMKELPEMS  360
GRVEDKEAIS LRMKKVVYDT ITSADFEREW VEMINQYNLH DNRWLTTLFE ERAKWVPAYV  420
KDTFWAGIST VRRSERLEAF FDGYITPETT IKTFIEQFDT AMKLRSDREA YDDFRSFQQR  480
PQVLSGLLFE EQFANVYTIN MFQKFQDQLK QLMNVNCTEV SRSGSIVTYT VTVIGKERKF  540
DYRVMYNSAE KEVWCICRSF QFKGILCSHA LAVLRQELVM LIPPKYILDR WRKDYKCPEE  600
PKETPISPNA AKATGKGTKP ENVREDKVDN LYKHGHQYFA DIVEMGATDP DAMEYVLSVM  660
KEAKEKVRKF EESRKEKRPG ESPVSAGKKG DKSSKPSTED VGNGTSASTP TTAAATTVTV  720
VSSAPMAAAP TMMAMAPASA AVPPGMFLVP MHPHPMVFPA FAPAVPPSVA PIAPPAAPAT  780
NVGDNTSNTS KKRKKRKGKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1790794KKRKK
2790796KKRKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.165520.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG204700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825620.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T8ICQ10.0A0A2T8ICQ1_9POAL; Uncharacterized protein
STRINGPavir.Ga01387.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-118FAR1-related sequence 6