PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG220400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 258aa    MW: 26927.2 Da    PI: 4.6259
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG220400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.4e-08446541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Pavir.7KG220400.1.p  4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklagkHQRLP 46
                         6******99*********************6678888898877 PP
2zf-B_box28.14.3e-095585434
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                         ++C+ ++ek++ +fC +++ l+C+dC + +H
  Pavir.7KG220400.1.p 55 PRCDVCQEKPAFIFCVEDRALFCRDCDEPIH 85
                         79**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000213.50E-6347No hitNo description
SMARTSM003362.7E-9447IPR000315B-box-type zinc finger
PfamPF006439.3E-6447IPR000315B-box-type zinc finger
SMARTSM003365.3E-155299IPR000315B-box-type zinc finger
CDDcd000211.00E-75585No hitNo description
PfamPF006435.1E-75595IPR000315B-box-type zinc finger
PROSITE profilePS501198.5175799IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAG KHQRLPLGDG SGGVPRCDVC  60
QEKPAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFSSVC GAGAGAGADA  120
DALPPPKGGA SKPAATAGAA KAPASKPAQP QEVPSSPFLP PSGWAVEDLL QLTDYESSDK  180
KDSPLEFKEL EWFADIDLFH GHAPAKAATA EVPELLATPQ PASNAGFYRT SGARQSKKPR  240
VELPDDEDDF FIVPDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.15781e-172leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG220400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2459061e-130DQ245906.1 Zea mays clone 22173 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976063.11e-153B-box zinc finger protein 24
SwissprotQ962886e-69BBX24_ARATH; B-box zinc finger protein 24
TrEMBLK3Y9J21e-151K3Y9J2_SETIT; Uncharacterized protein
STRINGPavir.Ga01518.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-66DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]