PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG245100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 283aa MW: 30367.2 Da PI: 8.2112

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG245100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.7	5.2e-11	57	175	3	126
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p f F+P ++lv +yL ++ + + +l i+++d+y ++P L + +++ + ew fF++r + +r + g + tg+ Pavir.7KG245100.1.p 57 PPFDFDPAPDNLVGRYLPARRALRCGDLPPQIHDADVYGAHPAFLARhpPASGARPEWLFFVCRGRGLG----GKRRAGPGAYRLTGEAD 142 6699***********99988877777667**********84233333455****99654....4455678****65 PP NAM 91 evlskkgelvglkktLvfy..kgrapkgektdWvmhey 126 + g + + + + +y +a+ g++t+W m+ey Pavir.7KG245100.1.p 143 P-----GGAAWYCHCFRYYedAVEASAGRETEWRMEEY 175 5.....44589999*4445999*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.14	55	198	IPR003441	NAC domain
SuperFamily	SSF101941	7.59E-18	56	196	IPR003441	NAC domain
Pfam	PF02365	1.8E-6	57	175	IPR003441	NAC domain
PROSITE profile	PS51005	6.093	213	283	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-7	224	279	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MQQAASSSAP PAGFREEVTD DGWVLLGTGS SSDTAAVARP PRPPRRGGNR PPAGAQPPFD 60 FDPAPDNLVG RYLPARRALR CGDLPPQIHD ADVYGAHPAF LARHPPASGA RPEWLFFVCR 120 GRGLGGKRRA GPGAYRLTGE ADPGGAAWYC HCFRYYEDAV EASAGRETEW RMEEYGDRCP 180 GGGGGGAFDV VVCKVFPARG GALDGRLRLD AAARRAGADD VRPQVLVQLY LASLSAGDPL 240 RCRMHRAADV CAAHPAVLTA VLPPANDQFE WFFVVRRPRT ELP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG245100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825360.1	1e-152	uncharacterized protein LOC112900773
TrEMBL	A0A2T8ID37	1e-151	A0A2T8ID37_9POAL; Uncharacterized protein
STRING	Pavir.Gb01277.1.p	1e-137	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14767	18	19

Link Out ? help Back to Top
Phytozome	Pavir.7KG245100.1.p