PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG247500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 149aa    MW: 17061.3 Da    PI: 8.4742
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG247500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.83.2e-2229117189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +f+ +Y+ ++GF+vrk++++ sk  g+ t+ ++vC keg+r+e+k++ +  +++raetrtgC+ ++ +++++ +g+++v++l+leHnH l
  Pavir.7KG247500.1.p  29 SFWVDYGGHAGFEVRKRYTNISKFVGKPTSCRYVCPKEGRRTEDKRD-NGIKNPRAETRTGCQVRMGLTLDRvEGNYKVIDLVLEHNHVL 117
                          59******************************************999.99**********************9***************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1730117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAEPNKENMN LVWVPRAGQT FRNLDDARSF WVDYGGHAGF EVRKRYTNIS KFVGKPTSCR  60
YVCPKEGRRT EDKRDNGIKN PRAETRTGCQ VRMGLTLDRV EGNYKVIDLV LEHNHVLYLP  120
ETFHLMLSQR KISELQAFEI EAAEDSGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG247500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674772.12e-57protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025876513.19e-57protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLK3Z0181e-75K3Z018_SETIT; Uncharacterized protein
STRINGSi019879m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein