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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.7KG250200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 430aa MW: 45661.7 Da PI: 6.0591 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG250200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 261.2 | 3.5e-80 | 34 | 427 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevs 88
++lLl+cA a++s+d +laq++++ l+++as++gdp+qRl++ +++AL ar r + +a +p + + +++++++l +++++
Pavir.7KG250200.1.p 34 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPNQRLTSWLLRALVARACRLCGPAGAAQaAPAPPE-----RAMSVTELaeYVDLT 118
699***************************************************4444433331333333.....23333333339**** PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
P+++f++ + N aIl+av+g+ +vH++D++++ ++QWp+L++ L++Rp+gpp lRiT+ ++ ++ ee+g rLa+fA++ gv+
Pavir.7KG250200.1.p 119 PWHRFGFTASNGAILRAVAGSAAVHVVDLGVTRCMQWPTLIDMLSKRPGGPPALRITVPSARPAVpplLGVPDEELGVRLANFARSKGVQ 208
*********************************************************99996666877777789**************** PP
GRAS 176 fefnvl........................vakrledl......eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
+efnv+ +++ dl ++ +L+++ gEal+Vn++ + ++ s+rd++L++v+ l+
Pavir.7KG250200.1.p 209 LEFNVVgkgtgtststsptptsspkkqaapLCQ---DLlasvlsDPPSLALRDGEALVVNCQSWIRHVA-----PGSRRDAFLDTVRALN 290
*********999999999998887776554222...2234456788999**************999997.....455678********** PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
P +v+v++++ad++s+s++ r+ ++++++ lfd+l++++pr+s + E++ +gr+i++vv + a+ er e+ ++ er+++ GF
Pavir.7KG250200.1.p 291 PCLVTVTDEDADLDSPSLASRIEGCFNFHWILFDALDTSAPRDSPRWMEHEAA-VGRKIESVVGADDADGAERSESGARLAERMRRNGFA 379
********************************************999999998.************************************ PP
GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
v+++e+aa ++++ll++++ g+ v+ e++ lvl+Wk++ v + aW+
Pavir.7KG250200.1.p 380 GVAFDEEAAGEVRRLLSEHA-TGWGVKREEDMLVLTWKGHGAVYTGAWT 427
********************.99*************************5 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MEQELRTAGG SGGGLRAHSS VCFSGALIDG PRIQQLLLHC AAALESNDVT LAQQAMWVLN 60
NIASSQGDPN QRLTSWLLRA LVARACRLCG PAGAAQAAPA PPERAMSVTE LAEYVDLTPW 120
HRFGFTASNG AILRAVAGSA AVHVVDLGVT RCMQWPTLID MLSKRPGGPP ALRITVPSAR 180
PAVPPLLGVP DEELGVRLAN FARSKGVQLE FNVVGKGTGT STSTSPTPTS SPKKQAAPLC 240
QDLLASVLSD PPSLALRDGE ALVVNCQSWI RHVAPGSRRD AFLDTVRALN PCLVTVTDED 300
ADLDSPSLAS RIEGCFNFHW ILFDALDTSA PRDSPRWMEH EAAVGRKIES VVGADDADGA 360
ERSESGARLA ERMRRNGFAG VAFDEEAAGE VRRLLSEHAT GWGVKREEDM LVLTWKGHGA 420
VYTGAWTPS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727002 | 0.0 | KJ727002.1 Zea mays clone pUT3978 GRAS transcription factor (GRAS62) gene, partial cds. |
