PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG252300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 132aa    MW: 14250.5 Da    PI: 8.9227
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG252300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.5e-121492286
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                           vl++ +v k ++l +p +  ++  g+   +    +    ++sW v+++  +  +   l+ GW++Fv an+L+ gD +vF+l+ 
  Pavir.7KG252300.1.p 14 TIVLSKGHVDKPAQLEIPSRLHSHLPGSR-VP---AVLLFGNQSWAVTYC--GELKCKKLGPGWRDFVVANRLRIGDACVFELIT 92
                         56677778888888888888774443331.22...23334569******5..5554456***********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-167114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-15892IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1411114No hitNo description
SMARTSM010197.4E-513116IPR003340B3 DNA binding domain
PROSITE profilePS5086311.15213116IPR003340B3 DNA binding domain
PfamPF023626.5E-91392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQIVPLSGDK PFFTIVLSKG HVDKPAQLEI PSRLHSHLPG SRVPAVLLFG NQSWAVTYCG  60
ELKCKKLGPG WRDFVVANRL RIGDACVFEL ITPAAGGTGS EGDGKVVFRV QVLRGDLPEE  120
ITSRGATSRD PI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG252300.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811196.11e-59B3 domain-containing protein Os06g0112300-like isoform X1
RefseqXP_025811197.19e-60B3 domain-containing protein Os06g0112300-like isoform X2
RefseqXP_025811198.19e-60B3 domain-containing protein Os06g0112300-like isoform X2
SwissprotQ9LHY92e-33Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLA0A3L6PEL13e-59A0A3L6PEL1_PANMI; B3 domain-containing protein
STRINGPavir.Fb00518.1.p3e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-07related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]