PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG255700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 202aa MW: 20793.6 Da PI: 10.5997

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG255700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.7	4.2e-34	47	142	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsssg......... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c ss s+s+++ + Pavir.7KG255700.1.p 47 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSC---SSAPSTSSPTVAaaahpvlgk 133 89*******************************************************999994444...222222222222222223333 PP TCP 89 ........k 89 + Pavir.7KG255700.1.p 134 rpredhepA 142 333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-30	46	139	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MASRDAATFQ VYRPMPAPTP APAPMSLAAA ADAAAPAPKK ASPGAGKDRH SKVNGRGRRV 60 RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSILAA TGSGTTPAVF SCSSAPSTSS 120 PTVAAAAHPV LGKRPREDHE PAPAPAPFWA TLQARPVAWG LSPAQEAAAQ AYASVAAQQG 180 HHLNLLSVLS GAARPSEEES R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG255700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727696	1e-144	KJ727696.1 Zea mays clone pUT5635 TCP transcription factor (TCP14) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976294.1	5e-92	transcription factor PCF1
Swissprot	Q9FMX2	3e-38	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0A9DEW8	3e-97	A0A0A9DEW8_ARUDO; Uncharacterized protein
STRING	Pavir.Ga00835.1.p	1e-139	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-35	TCP family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG255700.1.p