PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG258100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 470aa    MW: 49743.5 Da    PI: 11.0477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG258100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18262312256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Pavir.7KG258100.1.p 262 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 312
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-30261320No hitNo description
PROSITE profilePS5103222.787262319IPR001471AP2/ERF domain
SMARTSM003804.7E-37262325IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23262321IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-31262320IPR001471AP2/ERF domain
PRINTSPR003673.3E-10263274IPR001471AP2/ERF domain
PfamPF008477.6E-12263312IPR001471AP2/ERF domain
PRINTSPR003673.3E-10285301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MLLARGGKVG SPGRVGVRIS FFTRILSSKY ILPGRWAFGC AHLRIGALQH RGRRLGMDAS  60
SASGESGGGG GCGGRRWKGK GVTPIQPRRQ LAPVMEDASA ASLRPLKKIG RGPDRFQRSA  120
SSLSTSSLAP PSPRASAASA AAAAASPPSA RRIFPFAYET SALAGGAAPR LQLPPWQHSS  180
ASPPRLQAPP QSQQMISFGA PPQHQAQLLL QAEGSPQQQQ HLLRYWNEAL NLSPRGGQAA  240
AAALPSLYQH LMRAPPPPPQ KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDSAEDAAM  300
AYDREAFKLR GENARLNFPD RFFGKGHAGG SGRTSASSAA AQQNAGAGSG SSSSSSPPQT  360
PDEASGQQTP PPHAEGSTTD WQPQPPVDTS SSQQGGSPRD TTTMPAVSSE MIHAPVAHGG  420
EWGPADEAWF NTWGPGSSFW DYDMDSTPPG LFLHGRFAGD EAGMEHSSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19261321465ATERF1
3gcc_A3e-19261321465ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.79512e-33callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG258100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275131e-150KJ727513.1 Zea mays clone pUT5372 AP2-EREBP transcription factor (EREB154) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824928.10.0ethylene-responsive transcription factor ERF054-like isoform X2
TrEMBLA0A2S3I9S30.0A0A2S3I9S3_9POAL; Uncharacterized protein
STRINGPavir.Ga00913.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.16e-36ERF family protein