PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG268200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 386aa    MW: 40679.7 Da    PI: 7.7657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG268200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19305339135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pavir.7KG268200.4.p 305 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 339
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.57E-14296360No hitNo description
PROSITE profilePS5011412.018299335IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-18299353IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-15303337IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-14304361No hitNo description
PROSITE patternPS003440305330IPR000679Zinc finger, GATA-type
PfamPF003202.6E-17305339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCACFSGPAV KDDGRMDALK SHNSFPPEET AEDAAAAAAG ALAEKDGFSV EDLLDLEEFG  60
EPDKDGPDNE EAPPPPAAAA AEVKSNEDSQ PLSVVTYDLP PPPPEMVDLP AHDVEELEWV  120
SRIMDDSLSE LPPQPQPSAA LVASMALRPP LTQQRRAPQA HDGAYRALPA AHGPLRTPTI  180
CALSTEALVP VKAKRSKRTR GPGWSLSGAS FLSDSASSSS TTTTSSCSSS GSFSSFLLDS  240
PPFGGLELGE GYFNHFLPAP PSKKSKHGGG KGSKHKPKKR GRRPKHLPPN PSAAAQQPAP  300
GDRRCSHCGV QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FVSSIHSNSH  360
RKVLEMRRKK EGGMVATAAP AVASF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.66340.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG268200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9693520.0EU969352.1 Zea mays clone 329022 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-180uncharacterized protein LOC100284693
TrEMBLA0A2S3I8X60.0A0A2S3I8X6_9POAL; Uncharacterized protein
STRINGPavir.Ga00679.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5