PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG273100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 246aa    MW: 27052.2 Da    PI: 10.4093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG273100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.32e-10140162123
                          ---SS-EEEEEEE--TT-SS-EE CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                          ldDgy+WrKYGqK+vk+s +p s
  Pavir.7KG273100.1.p 140 LDDGYKWRKYGQKVVKNSLHPSS 162
                          59****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-12125162IPR003657WRKY domain
SuperFamilySSF1182903.79E-9132162IPR003657WRKY domain
PROSITE profilePS5081112.84135174IPR003657WRKY domain
SMARTSM007747.6E-4140176IPR003657WRKY domain
PfamPF031068.4E-7141162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGSSQFETC LPSLFSPCAL PPPLAPLPNQ HKLLQMPLFQ VQEQGGNHDV MLSSDHHGGL  60
YPLLLPGIPF VVLDAGEAGT SAAKASGEIA STTTTGTFHG SSSWWKGSAA AAGEKARMKV  120
RRKMREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP SSLMISPLIM SFACVQELLP  180
VHPQQLPREE ASGAAVGGLP HGDHHLRGAP HPLPLQRRRR RRPHRQLRLQ LALEIDRRRA  240
LAHLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123ARMKVRRKM
2206219RGAPHPLPLQRRRR
3215221QRRRRRR
4216224RRRRRRPHR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.120281e-48callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG273100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654322e-62EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825009.11e-85probable WRKY transcription factor 12
TrEMBLA0A2S3I9432e-85A0A2S3I943_9POAL; Uncharacterized protein
STRINGPavir.Ga00648.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-25WRKY family protein