PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG273100.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WRKY

Protein Properties

Length: 218aa MW: 23959.1 Da PI: 8.4053

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG273100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.6e-32	140	198	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Pavir.7KG273100.2.p 140 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHS 198 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	125	198	IPR003657	WRKY domain
SuperFamily	SSF118290	1.19E-28	132	198	IPR003657	WRKY domain
PROSITE profile	PS50811	28.92	135	197	IPR003657	WRKY domain
SMART	SM00774	7.7E-38	140	199	IPR003657	WRKY domain
Pfam	PF03106	2.8E-25	141	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEGSSQFETC LPSLFSPCAL PPPLAPLPNQ HKLLQMPLFQ VQEQGGNHDV MLSSDHHGGL 60 YPLLLPGIPF VVLDAGEAGT SAAKASGEIA STTTTGTFHG SSSWWKGSAA AAGEKARMKV 120 RRKMREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP RSYYRCTHSN CRVKKRVERL 180 SEDCRMVITT YEGRHTHSPC SDDAGDDHTG SCVFSSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-25	131	197	8	74	Probable WRKY transcription factor 4
2lex_A	5e-25	131	197	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	ARMKVRRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.12028	1e-102	callus

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG273100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067982	1e-126	BT067982.1 Zea mays full-length cDNA clone ZM_BFb0009G22 mRNA, complete cds.
GenBank	BT068156	1e-126	BT068156.2 Zea mays full-length cDNA clone ZM_BFb0072A01 mRNA, complete cds.
GenBank	EU972805	1e-126	EU972805.1 Zea mays clone 388369 WRKY36 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBank	KJ728312	1e-126	KJ728312.1 Zea mays clone pUT6592 WRKY transcription factor (WRKY101) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825009.1	1e-127	probable WRKY transcription factor 12
Swissprot	Q93WY4	2e-60	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A2S3I8X2	1e-126	A0A2S3I8X2_9POAL; Uncharacterized protein
STRING	Pavir.Ga00648.1.p	1e-163	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	4e-57	WRKY family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG273100.2.p

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]