PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG275600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 323aa    MW: 34392.8 Da    PI: 6.9643
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG275600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-20134185256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g++++eIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  Pavir.7KG275600.1.p 134 KYRGVRQRP-WGKYAVEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 185
                          8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31133193IPR001471AP2/ERF domain
SMARTSM003803.0E-35134198IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22134193IPR016177DNA-binding domain
PfamPF008474.0E-14134184IPR001471AP2/ERF domain
CDDcd000183.38E-29134193No hitNo description
PROSITE profilePS5103223.604134192IPR001471AP2/ERF domain
PRINTSPR003671.6E-13135146IPR001471AP2/ERF domain
PRINTSPR003671.6E-13174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MYFAGDSDGF ALDFIGEHLL DGGCGGVPVG STRVPDDVTF PMLQPQPEFQ SMPSFLPPLR  60
QQGYAHLTHE REGAALAAAA MASPVMIKFG SEPSSPVRPA LIITVPPSSY AWTAESVTAP  120
MPAAAASADD DFRKYRGVRQ RPWGKYAVEI RDPKRRGSRV WLGTYDTPVE AARAYDRAAF  180
RMRGAKAILN FPNEVGTRGA DLWAPPPQPP AATQAAPANK RKRPQEERDV EVLAVINKAV  240
KIEMPSSSSS TSPSPAMSAR ETTASASSTV TSTTTEAAGA GADWLPVKPS SGSWDQYWEA  300
LLGGMPPLSP HPAMGFPQLT VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25133197468ATERF1
3gcc_A2e-25133197468ATERF1
5wx9_A2e-251341941474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG275600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275259e-96KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825916.11e-154ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PS241e-154A0A3L6PS24_PANMI; Uncharacterized protein
STRINGPavir.Ga01098.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-32ERF family protein