PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG278100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 165aa    MW: 17581.8 Da    PI: 4.2295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG278100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.6e-143391150
                  AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50
                          +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+
  Pavir.7KG278100.2.p  3 AWGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAA 39
                         6**********843...6*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.96E-13130No hitNo description
PROSITE profilePS5103215.685150IPR001471AP2/ERF domain
SMARTSM003805.4E-23156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-23151IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15250IPR016177DNA-binding domain
PfamPF008476.7E-8339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRAWGKWVSE IREPRKKSRI WLGTFDNPEM AARAHDAAAV AGRAAHLNFP ELAHELPRAA  60
SAAPKDVQAA AALAAATLQA AAAASPVVLS FDNSDAAVAG TAPDQAVEQY EQAAAPDLAF  120
LDVPDFPLDF GYMLSPLPPS YCGSPWDDIA DELCFEEPLL LWEH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111096e-62stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG278100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278644e-84KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825378.16e-69ethylene-responsive transcription factor ERF039-like
TrEMBLA0A3L6PZN45e-68A0A3L6PZN4_PANMI; Uncharacterized protein
STRINGPavir.Ga01094.1.p1e-91(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.16e-18ERF family protein