PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG278200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 224aa    MW: 23482.9 Da    PI: 5.3065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG278200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-184493255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pavir.7KG278200.1.p 44 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 93
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-2144102IPR016177DNA-binding domain
PfamPF008471.9E-124493IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3244103IPR001471AP2/ERF domain
SMARTSM003806.0E-3744107IPR001471AP2/ERF domain
PROSITE profilePS5103222.99844101IPR001471AP2/ERF domain
PRINTSPR003679.7E-114556IPR001471AP2/ERF domain
CDDcd000181.11E-2945103No hitNo description
PRINTSPR003679.7E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDTDDTHEPA SPTSASSTSS SSSGSSSSQA PKKRARQDGT RHPTYRGVRM RSWGKWVSEI  60
REPRKKSRIW LGTFATAEMA ARAHDVAALA IKGRAAHLNF PEQAHLLPRP ATASPKDVQA  120
AATLAAATDF PAPPPPPPFS PSPGGANAKS PESSSSDGAS AAASPPHEAP PQDAEPDPDE  180
ALFDLPDLLL DLRCCGPSSW AVDDDVAGGG AFRLIEEPLL WEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1935106577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036PKKRARQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.124981e-134callus
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG278200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653061e-126EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824789.11e-106ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ79e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2S3I9351e-104A0A2S3I935_9POAL; Uncharacterized protein
STRINGPavir.Ga01093.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]