PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG292300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 201aa    MW: 21064.1 Da    PI: 5.9818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG292300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-161765255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r  +++ +Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Pavir.7KG292300.1.p 17 FYRGIR--SRSSKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 65
                         69***7..4567********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.2E-281779IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-181774IPR016177DNA-binding domain
PROSITE profilePS5103219.5461773IPR001471AP2/ERF domain
PfamPF008479.4E-91865IPR001471AP2/ERF domain
CDDcd000188.61E-251875No hitNo description
Gene3DG3DSA:3.30.730.101.0E-261874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSDYGGPASP RTGKHPFYRG IRSRSSKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
RALRGPDTAL NFPDLAASRP APASTSSDDI RAAAAEAAAA LQEPDRRPAR GIAPAAAGGG  120
AQQQQTAGGS SSAAAQQEGG GSSAGTQYYL DDEALFETPQ YLRNMAAGMM MSPPRLGRNS  180
SDDSPDPSEA GDSLWSYRDP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG292300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-132EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825905.11e-119ethylene-responsive transcription factor ERF025-like
TrEMBLA0A2T7CYV71e-118A0A2T7CYV7_9POAL; Uncharacterized protein
STRINGPavir.Ga00932.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-30ERF family protein