PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG292400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 229aa    MW: 24700.5 Da    PI: 6.5166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG292400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-173989155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + ykGVr +   grWv+e+r+p   g r r++lg+f tae+Aa+a++ a+++l+g
  Pavir.7KG292400.1.p 39 PVYKGVRSRN-PGRWVCELREP--HG-RHRIWLGTFETAEMAARAHDVAALALRG 89
                         68****9666.9******9997..23.5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-123989IPR001471AP2/ERF domain
PROSITE profilePS5103221.2464097IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-204098IPR016177DNA-binding domain
SMARTSM003802.0E-2740103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-294099IPR001471AP2/ERF domain
PRINTSPR003679.7E-84152IPR001471AP2/ERF domain
CDDcd000183.11E-184199No hitNo description
PRINTSPR003679.7E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDWPYSGGGG GEDGAYMTVS SAPPKRRAGR TKFKETRHPV YKGVRSRNPG RWVCELREPH  60
GRHRIWLGTF ETAEMAARAH DVAALALRGR AACLNFADSP RRLRVPPQGA GHDEIRRAAV  120
EAAELFRPQR NAGSPEAAAA AAIAAPDAQA TGGLGGDFAY YPPDDGLDFE MQGYLDMAQG  180
MLIDPPPANA GQSAWIDDEY DCEEEQRSVL RFSEAASAHV AVALTRPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1238961271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG292400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560441e-176EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976544.11e-112dehydration-responsive element-binding protein 1E
SwissprotA2XWL64e-98DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2734e-98DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLK3Y9W31e-111K3Y9W3_SETIT; Uncharacterized protein
STRINGPavir.Ga00931.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.18e-36dehydration response element B1A
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]