PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG294700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 336aa MW: 38167.8 Da PI: 9.7878

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG294700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.3e-26	201	250	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Pavir.7KG294700.1.p 201 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 250 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.77	185	270	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	202	250	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDMDAAVSTL TALSVFDSTV EHGAFRSVHG YKVIGRKDGK WLRWERWVER QFVLSLSVPP 60 CREVAVPAAS PRILLAGWHG RPVFREGQTV GPWRCIVAFD SVAAVAPSSP PPPVLSPLVN 120 PQLECLPNLY RDLQKVFRFQ KVEKVPQMVH RNAKEQPIRS GEQEKTSDEA DSSGSDSDGD 180 PQSDKEPPVQ KQPRANRKHI DSITLVEIAQ YFHLPIREAS KTLKIGVSIL KRKCRKYGIP 240 RWPHRKIKSL ESLINDLEYV LDDDPGEDAQ QELQKIEEEK RAAAIKALTK RKKMLESEKE 300 IIQQKPALDL MTETKQFRED VFKRRHRASK SVVME*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.16567	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG294700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825577.1	0.0	protein RKD5
TrEMBL	A0A3L6QAH3	0.0	A0A3L6QAH3_PANMI; Protein RKD5
STRING	Pavir.Ga01021.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-36	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG294700.1.p