PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG313900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 415aa    MW: 43998.1 Da    PI: 6.7344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG313900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.61.4e-2997188187
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  
  Pavir.7KG313900.1.p  97 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGa 186
                          89***************************955556888************************************************8543 PP

                          SS CS
                   B3  86 gr 87 
                          g+
  Pavir.7KG313900.1.p 187 GE 188
                          44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4187207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-2894185IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-2595182No hitNo description
PfamPF023629.5E-2797200IPR003340B3 DNA binding domain
PROSITE profilePS5086313.77597202IPR003340B3 DNA binding domain
SMARTSM010191.4E-2097202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEFASSSSRF SKEEDEEEEQ EEDAEASPRE IPFMTAAATA TTGGAAASSS SSPPAAASAS  60
ASASGPAALR SSDGAGASGS GGGGSDDVEV IEKEHMFDKV VTPSDVGKLN RLVIPKQHAE  120
KYFPLDAAAN EKGLLLSFED RAGKLWRFRY SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV  180
SFCRGAGEAA RDRLFIDWKR RADSRDPHRM PRLPLPMAPV ASPYGPWGGG AGGFFMPPAP  240
PATLYEHHRF RQGLDFRNIN AAAPARQLLF FGSAGMPPRA SMPMPMPPPP PPHNIMMVQQ  300
PSRPVVTTAG LPMVLDSVPL VNSPTAAAKR VRLFGVNLDD NPQPSGGGES SQDTNALSLR  360
MPGWQRPGPW RFLESPQHGA GAGATGGAES SAASSPSSSS SSKREAHSSL DLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-61922013113B3 domain-containing transcription factor NGA1
5os9_B3e-61922013113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG313900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976592.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-133Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A1E5V6G80.0A0A1E5V6G8_9POAL; B3 domain-containing protein
STRINGPavir.Ga00960.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]