PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG317200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 316aa    MW: 33968.6 Da    PI: 6.5056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG317200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161564148
                         TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Pavir.7KG317200.1.p 15 KGPWTEEEDRALVEHIQRHGGHvgSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                         79**********************************************97 PP
2Myb_DNA-binding55.41.4e-1770114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Pavir.7KG317200.1.p  70 RGNFTADEERLIIALHAELGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-23767IPR009057Homeodomain-like
PROSITE profilePS5129417.2651064IPR017930Myb domain
SuperFamilySSF466895.03E-2912111IPR009057Homeodomain-like
SMARTSM007176.7E-121466IPR001005SANT/Myb domain
PfamPF002491.7E-141564IPR001005SANT/Myb domain
CDDcd001672.94E-101764No hitNo description
PROSITE profilePS5129427.28665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2668119IPR009057Homeodomain-like
SMARTSM007176.0E-1669117IPR001005SANT/Myb domain
PfamPF002492.8E-1570114IPR001005SANT/Myb domain
CDDcd001672.85E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QRHGGHVGSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTADEERL IIALHAELGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ RLPPDDVLIG GAAPGLPEAL LSAAASLGGL NTVLMQAQAL QLLLQAVSGG  180
AAAGAGLVAS FSPAADNAAM PPMLNASSIV PNLQDQQMMN LLAHANYRPA DDYLSNLASF  240
AEHDVVRQPN ASAPAPALLV PASSSPQEVA AAADRRPVQG FSDLLSEAME VPSMCSLEDE  300
HFWKDLLAES NHLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG317200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569040.0AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543980.0BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586910.0HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825704.10.0transcription factor MYB41-like
SwissprotQ9S9Z21e-66MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3L6Q4P10.0A0A3L6Q4P1_PANMI; Transcription factor MYB39
STRINGPavir.Gb00812.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.11e-70myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]