PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG333300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 190aa    MW: 19851 Da    PI: 10.8032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG333300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-131756245
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
                         gykGVr+++ +g+Wv+eIr+p +   r r +lg++ t+e A  a
  Pavir.7KG333300.1.p 17 GYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAVVA 56
                         8*****777.**********943...5**********9998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-171791IPR001471AP2/ERF domain
PfamPF008471.6E-61753IPR001471AP2/ERF domain
PROSITE profilePS5103219.1511785IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-181786IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-131768IPR016177DNA-binding domain
PRINTSPR003671.6E-71829IPR001471AP2/ERF domain
CDDcd000181.60E-141865No hitNo description
PRINTSPR003671.6E-74056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKLAERGDEP ESERRRGYKG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAVVAHGTA  60
VYLLRGGTGA GAAAAAGDVA ALNFPERAAA AYGAGRLSPR SVQRVASDAG MAADAQLVAA  120
RDSAPAHRHA DRRTGIASAQ GGGASARPRY QDAGAYTSQA RATRNSAGAS REQQPVSGEI  180
SVDDIEILV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG333300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9545301e-101EU954530.1 Zea mays clone 1469452 transcriptional factor TINY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970828.13e-82ethylene-responsive transcription factor ERF020
SwissprotQ9C9I85e-30ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3L6SME75e-90A0A3L6SME7_PANMI; Uncharacterized protein
STRINGPavir.J06813.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-19ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]